TF_ChIP-seq_ENCSR793USK
TF_ChIP-seq ENCSR793USK [biosample_summary="Homo sapiens PC-9" and target="EZH2"]
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| Id: | TF_ChIP-seq/ENCSR793USK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR793USK [biosamplesummary="Homo sapiens PC-9" and target="EZH2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF476NAK|/files/ENCFF476NAK/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN087HWK|/analyses/ENCAN087HWK/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF365QIY|/files/ENCFF365QIY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10646745 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF587KIN|/files/ENCFF587KIN/}, {ENCFF269ZVM|/files/ENCFF269ZVM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.69 and a self consistency ratio of 2.13. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF866SJZ|/files/ENCFF866SJZ/}, {ENCFF476NAK|/files/ENCFF476NAK/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 1.69 and a self consistency ratio of 2.13. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR793USK | float |
TF_ChIP-seq_ENCSR793USK |
TF_ChIP-seq ENCSR793USK [biosample_summary="Homo sapiens PC-9" and target="EZH2"]
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[9.67, 409] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF476NAK.bed.gz | 53.78 KB | 2c86a61b0af49a31cd163ca2cb4e2f7c |
| ENCFF476NAK.bed.gz.dvc | 99.0 B | ccd3c637fa5b7d8eb0bcd0829fb8d9bd |
| ENCFF476NAK.tabix.bed.gz | 40.73 KB | a2d75ae9270a6eee995a22d3e82189c2 |
| ENCFF476NAK.tabix.bed.gz.dvc | 105.0 B | 2a27ce0042ff878c0483bea629ce9b04 |
| ENCFF476NAK.tabix.bed.gz.tbi | 23.01 KB | 805ed01a15fa167737cbde6e7ae986f6 |
| ENCFF476NAK.tabix.bed.gz.tbi.dvc | 109.0 B | 15eb45b6578c8e8befbf960e2cac6181 |
| genomic_resource.yaml | 3.23 KB | 76b2a4520ca2a0779ef2bc55b9a6d1c3 |
| genomic_resource_original.yaml | 3.14 KB | f240073eb1c9a62611d10c02a7a9c8b2 |
| statistics/ |