TF_ChIP-seq_ENCSR792IYC
TF_ChIP-seq ENCSR792IYC [biosample_summary="Homo sapiens K562" and target="BCLAF1"]
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| Id: | TF_ChIP-seq/ENCSR792IYC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR792IYC [biosamplesummary="Homo sapiens K562" and target="BCLAF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN136HWH|/analyses/ENCAN136HWH/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF094XPM|/files/ENCFF094XPM/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF615VMZ|/files/ENCFF615VMZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF615VMZ|/files/ENCFF615VMZ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.60. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF478IFD|/files/ENCFF478IFD/}, {ENCFF094XPM|/files/ENCFF094XPM/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.41 and a self consistency ratio of 1.54. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF892TYC|/files/ENCFF892TYC/}, {ENCFF554OJO|/files/ENCFF554OJO/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 2.41 and a self consistency ratio of 1.54. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR792IYC | float |
TF_ChIP-seq_ENCSR792IYC |
TF_ChIP-seq ENCSR792IYC [biosample_summary="Homo sapiens K562" and target="BCLAF1"]
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[10.7, 1.03e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF094XPM.bed.gz | 37.47 KB | 2c022b5939304c36a2949f7d583a06b6 |
| ENCFF094XPM.bed.gz.dvc | 99.0 B | e040748d9e60b6676c0cc0dd6693efff |
| ENCFF094XPM.tabix.bed.gz | 24.0 KB | 38bb6574c939a1812534a67d14b8e55a |
| ENCFF094XPM.tabix.bed.gz.dvc | 105.0 B | bfe1972cf199b2594b14a606da12c6da |
| ENCFF094XPM.tabix.bed.gz.tbi | 18.64 KB | f72a9421321612768b7de617769cc75e |
| ENCFF094XPM.tabix.bed.gz.tbi.dvc | 109.0 B | 8d0df88e83890b69c13b23a557153ac1 |
| genomic_resource.yaml | 4.51 KB | 65c0188d4a5629cdc70f052b84c00a64 |
| genomic_resource_original.yaml | 4.41 KB | a9619e7fd666739c267e7d3fe90ff5d5 |
| statistics/ |