TF_ChIP-seq_ENCSR788SXN
TF_ChIP-seq ENCSR788SXN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF607" and target="ZNF607"]
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| Id: | TF_ChIP-seq/ENCSR788SXN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR788SXN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF607" and target="ZNF607"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF607 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN523UHP|/analyses/ENCAN523UHP/} has in progress subobject document {b3a4ec65-5272-4eff-a95f-2bcbc6fc4824|/documents/b3a4ec65-5272-4eff-a95f-2bcbc6fc4824/} audit_internal_action: Released analysis {ENCAN523UHP|/analyses/ENCAN523UHP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF798NTA|/files/ENCFF798NTA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF798NTA|/files/ENCFF798NTA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.88. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF135NFH|/files/ENCFF135NFH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF135NFH|/files/ENCFF135NFH/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.87. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF754OSO|/files/ENCFF754OSO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF118ANP|/files/ENCFF118ANP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.30 and a self consistency ratio of 2.27. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR788SXN | float |
TF_ChIP-seq_ENCSR788SXN |
TF_ChIP-seq ENCSR788SXN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF607" and target="ZNF607"]
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[11.7, 591] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF754OSO.bed.gz | 344.86 KB | b0db3f2901ddfabcf7d92dff3a1b8444 |
| ENCFF754OSO.bed.gz.dvc | 100.0 B | 412620652f2790d76f432fc61686401c |
| ENCFF754OSO.tabix.bed.gz | 277.23 KB | ba46574fbaa395cd6ce545ade5f2718f |
| ENCFF754OSO.tabix.bed.gz.dvc | 106.0 B | 97092edcbaa12c2001494909454d52e6 |
| ENCFF754OSO.tabix.bed.gz.tbi | 106.5 KB | c90083cbc67e80964aa1de3af2e27948 |
| ENCFF754OSO.tabix.bed.gz.tbi.dvc | 110.0 B | 1f2c373a335c0462c9bd64b55d013185 |
| genomic_resource.yaml | 5.49 KB | fa808c30d3340e86b70b6c4104f37afd |
| genomic_resource_original.yaml | 5.33 KB | 236d8aecbfd6beb1e65dfed860485113 |
| statistics/ |