TF_ChIP-seq_ENCSR788RSW
TF_ChIP-seq ENCSR788RSW [biosample_summary="Homo sapiens K562" and target="SOX6"]
×
| Id: | TF_ChIP-seq/ENCSR788RSW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR788RSW [biosamplesummary="Homo sapiens K562" and target="SOX6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN480XHL|/analyses/ENCAN480XHL/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF431STY|/files/ENCFF431STY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF022LJH|/files/ENCFF022LJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF022LJH|/files/ENCFF022LJH/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF508MVS|/files/ENCFF508MVS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF508MVS|/files/ENCFF508MVS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.90. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR788RSW | float |
TF_ChIP-seq_ENCSR788RSW |
TF_ChIP-seq ENCSR788RSW [biosample_summary="Homo sapiens K562" and target="SOX6"]
|
|
[14.7, 7.51e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF431STY.bed.gz | 648.69 KB | 53acd783fa28f833f0c3f047a2fd7f1f |
| ENCFF431STY.bed.gz.dvc | 100.0 B | 692dd02f8131a77bd1144c19c94fac33 |
| ENCFF431STY.tabix.bed.gz | 469.56 KB | 560e5b5de8147bd59ca2366979fcb945 |
| ENCFF431STY.tabix.bed.gz.dvc | 106.0 B | 0cc228333d150a6335bc936189549204 |
| ENCFF431STY.tabix.bed.gz.tbi | 201.45 KB | 5d728cc57b9d6b5cab53452423679e5c |
| ENCFF431STY.tabix.bed.gz.tbi.dvc | 110.0 B | 98f3621a9818d4db431bd2b76abe704d |
| genomic_resource.yaml | 4.12 KB | 449eba98844ca1228563c1c31bfa7df8 |
| genomic_resource_original.yaml | 4.03 KB | 5ed751d50bbdf96c8263508cf1ffffa0 |
| statistics/ |