TF_ChIP-seq_ENCSR788DXU
TF_ChIP-seq ENCSR788DXU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3" and target="FOXA3"]
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| Id: | TF_ChIP-seq/ENCSR788DXU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR788DXU [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3" and target="FOXA3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN399HNP|/analyses/ENCAN399HNP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF804ITG|/files/ENCFF804ITG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF804ITG|/files/ENCFF804ITG/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.84. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF275RQB|/files/ENCFF275RQB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF275RQB|/files/ENCFF275RQB/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR788DXU | float |
TF_ChIP-seq_ENCSR788DXU |
TF_ChIP-seq ENCSR788DXU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens FOXA3" and target="FOXA3"]
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[14.9, 1.04e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF197SXI.bed.gz | 222.22 KB | 9d7cadf2a30e0095778a7db5ac3dfdd2 |
| ENCFF197SXI.bed.gz.dvc | 100.0 B | 2b53ed0a74be7191f5e71e4930431c52 |
| ENCFF197SXI.tabix.bed.gz | 162.52 KB | 01251014fb39e0b85be8ad0354bb9565 |
| ENCFF197SXI.tabix.bed.gz.dvc | 106.0 B | 55334e10f8d56031caa38eecb60210f2 |
| ENCFF197SXI.tabix.bed.gz.tbi | 82.78 KB | cdd41d4f4a770ebdd63a34a99d97b64d |
| ENCFF197SXI.tabix.bed.gz.tbi.dvc | 109.0 B | bf2e6fd4ed04c320e2917878fac54524 |
| genomic_resource.yaml | 4.23 KB | 9d3f2f02938b23dbf0f70a3fe2e4fe24 |
| genomic_resource_original.yaml | 4.07 KB | 35408fb21a2119a7e9ea595b7ea04edb |
| statistics/ |