TF_ChIP-seq_ENCSR787CHF
TF_ChIP-seq ENCSR787CHF [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF1" and target="USF1"]
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| Id: | TF_ChIP-seq/ENCSR787CHF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR787CHF [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF1" and target="USF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens USF1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN247JGW|/analyses/ENCAN247JGW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF100RAQ|/files/ENCFF100RAQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF100RAQ|/files/ENCFF100RAQ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.69. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF550KSJ|/files/ENCFF550KSJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF550KSJ|/files/ENCFF550KSJ/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.02. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR787CHF | float |
TF_ChIP-seq_ENCSR787CHF |
TF_ChIP-seq ENCSR787CHF [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens USF1" and target="USF1"]
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[18, 1.01e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF255QDL.bed.gz | 352.47 KB | 66adcc6dbae5d2f61863a379687a2beb |
| ENCFF255QDL.bed.gz.dvc | 100.0 B | 8deda1baf61a6f2394c527be91fdca62 |
| ENCFF255QDL.tabix.bed.gz | 261.18 KB | c287274acff1504ef5e1e31a3438900f |
| ENCFF255QDL.tabix.bed.gz.dvc | 106.0 B | 7e886508522e3dc41c8ed6b40813ce0e |
| ENCFF255QDL.tabix.bed.gz.tbi | 126.18 KB | c9316854f46de0d2ec12d6fa86171bfd |
| ENCFF255QDL.tabix.bed.gz.tbi.dvc | 110.0 B | 2d98357f13f98bba31792091134f1431 |
| genomic_resource.yaml | 4.22 KB | 98f6da6405dbd0668ef769eb688c538d |
| genomic_resource_original.yaml | 4.06 KB | bf034d1cc6d61872b6aeba0ada892deb |
| statistics/ |