TF_ChIP-seq_ENCSR784FYS
TF_ChIP-seq ENCSR784FYS [biosample_summary="Homo sapiens HepG2" and target="RBFOX2"]
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| Id: | TF_ChIP-seq/ENCSR784FYS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR784FYS [biosamplesummary="Homo sapiens HepG2" and target="RBFOX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Released analysis {ENCAN809PUV|/analyses/ENCAN809PUV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF807JYY|/files/ENCFF807JYY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11215352 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RBFOX2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF198IJO|/files/ENCFF198IJO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 11180387 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RBFOX2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF807JYY|/files/ENCFF807JYY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF807JYY|/files/ENCFF807JYY/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 8.71. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF198IJO|/files/ENCFF198IJO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF198IJO|/files/ENCFF198IJO/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 9.33. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR784FYS | float |
TF_ChIP-seq_ENCSR784FYS |
TF_ChIP-seq ENCSR784FYS [biosample_summary="Homo sapiens HepG2" and target="RBFOX2"]
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[3.14, 689] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF663YBI.bed.gz | 863.81 KB | 287cfe54371940bfc646bdb49a71483e |
| ENCFF663YBI.bed.gz.dvc | 100.0 B | 4ce28e19cd57323cea0741415dfbf03a |
| ENCFF663YBI.tabix.bed.gz | 515.09 KB | c230069f16b730383735660ab7da176f |
| ENCFF663YBI.tabix.bed.gz.dvc | 106.0 B | a024a1dbb61f16c8dfdce27fe5070348 |
| ENCFF663YBI.tabix.bed.gz.tbi | 127.85 KB | 9e019e64c894074886a538bf04857619 |
| ENCFF663YBI.tabix.bed.gz.tbi.dvc | 110.0 B | 2f7d1e2bef15f300598442aae490dc39 |
| genomic_resource.yaml | 4.93 KB | 7f116e6ccb0b09353a5440087d691778 |
| genomic_resource_original.yaml | 4.84 KB | 81453fd51a4a0781e302fd00d6e40258 |
| statistics/ |