TF_ChIP-seq_ENCSR782WWY
TF_ChIP-seq ENCSR782WWY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF546" and target="ZNF546"]
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| Id: | TF_ChIP-seq/ENCSR782WWY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR782WWY [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF546" and target="ZNF546"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF546 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN848FYD|/analyses/ENCAN848FYD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF353WHZ|/files/ENCFF353WHZ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF353WHZ|/files/ENCFF353WHZ/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.65. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF082UIY|/files/ENCFF082UIY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF082UIY|/files/ENCFF082UIY/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.08. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR782WWY | float |
TF_ChIP-seq_ENCSR782WWY |
TF_ChIP-seq ENCSR782WWY [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF546" and target="ZNF546"]
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[9.78, 534] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF455TXX.bed.gz | 209.43 KB | 77f928e36ea217067e7e348c9775e1bd |
| ENCFF455TXX.bed.gz.dvc | 100.0 B | 6a9957e160eb9395f320311670358b11 |
| ENCFF455TXX.tabix.bed.gz | 172.94 KB | ac0a4964d7003b68337cd2fd870bc2b1 |
| ENCFF455TXX.tabix.bed.gz.dvc | 106.0 B | 7f6f17f6549e97df407adca831f8f926 |
| ENCFF455TXX.tabix.bed.gz.tbi | 70.81 KB | b1edba6229989c12449b3608c5c60947 |
| ENCFF455TXX.tabix.bed.gz.tbi.dvc | 109.0 B | dbce7b01c78bd9be8a9c945e19b529ca |
| genomic_resource.yaml | 4.25 KB | 4e2f04b7e1ec9bb2f6ca279d8e945a8d |
| genomic_resource_original.yaml | 4.09 KB | 36b16f694e3b0a3be4d05b7a114d7c8f |
| statistics/ |