TF_ChIP-seq_ENCSR780OXL
TF_ChIP-seq ENCSR780OXL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1" and target="GMEB1"]
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| Id: | TF_ChIP-seq/ENCSR780OXL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR780OXL [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1" and target="GMEB1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN664GXX|/analyses/ENCAN664GXX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN664GXX|/analyses/ENCAN664GXX/} has in progress subobject document {e9aa508c-d72a-4d0d-b9df-6f78e34a874e|/documents/e9aa508c-d72a-4d0d-b9df-6f78e34a874e/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF139IZS|/files/ENCFF139IZS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF139IZS|/files/ENCFF139IZS/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.82. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF894SXP|/files/ENCFF894SXP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF894SXP|/files/ENCFF894SXP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.77. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF004QJZ|/files/ENCFF004QJZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 3.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF434UDC|/files/ENCFF434UDC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.33 and a self consistency ratio of 3.04. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR780OXL | float |
TF_ChIP-seq_ENCSR780OXL |
TF_ChIP-seq ENCSR780OXL [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens GMEB1" and target="GMEB1"]
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[10.2, 1.08e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF004QJZ.bed.gz | 393.72 KB | 14e578e13ce261abca36277fa19059de |
| ENCFF004QJZ.bed.gz.dvc | 100.0 B | 486718db81e43a7f2b01ead5e1172a33 |
| ENCFF004QJZ.tabix.bed.gz | 300.05 KB | f1566b2f21779a42606c8016c3503b2a |
| ENCFF004QJZ.tabix.bed.gz.dvc | 106.0 B | 37b4c73895152d58e7eabcd9a3c38210 |
| ENCFF004QJZ.tabix.bed.gz.tbi | 114.04 KB | a7a0c023665e24d35e5ae12e56dc23a6 |
| ENCFF004QJZ.tabix.bed.gz.tbi.dvc | 110.0 B | d17e91df04c9a0668e8666abddad8c08 |
| genomic_resource.yaml | 5.49 KB | b87f413bc5a857597b18bd0a3a757b6c |
| genomic_resource_original.yaml | 5.32 KB | e2a8db738a342ffad5a812c127797953 |
| statistics/ |