TF_ChIP-seq_ENCSR775YXE
TF_ChIP-seq ENCSR775YXE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37" and target="ZBTB37"]
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| Id: | TF_ChIP-seq/ENCSR775YXE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR775YXE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37" and target="ZBTB37"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN577BEW|/analyses/ENCAN577BEW/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN577BEW|/analyses/ENCAN577BEW/} has in progress subobject document {abd723e4-e94c-4ffb-8703-102d8a99b91a|/documents/abd723e4-e94c-4ffb-8703-102d8a99b91a/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF701RRX|/files/ENCFF701RRX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF701RRX|/files/ENCFF701RRX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.14. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF125SBE|/files/ENCFF125SBE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF125SBE|/files/ENCFF125SBE/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.54. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR775YXE | float |
TF_ChIP-seq_ENCSR775YXE |
TF_ChIP-seq ENCSR775YXE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZBTB37" and target="ZBTB37"]
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[8.53, 565] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF180WMP.bed.gz | 149.6 KB | 975349c666c53dd54900a4d940d46f09 |
| ENCFF180WMP.bed.gz.dvc | 100.0 B | a15c193e3310e99929dc828747dd649f |
| ENCFF180WMP.tabix.bed.gz | 111.7 KB | bae96f9262bd5379f06dbab05261a39b |
| ENCFF180WMP.tabix.bed.gz.dvc | 106.0 B | b4ab92b387275e2a421d0248b219d265 |
| ENCFF180WMP.tabix.bed.gz.tbi | 58.04 KB | aa8aef3c7c2ce7f9fbea32a91d0c2bea |
| ENCFF180WMP.tabix.bed.gz.tbi.dvc | 109.0 B | 13ce57ddc35f6f85211f3e3ca21d5e93 |
| genomic_resource.yaml | 4.45 KB | e99b26ff94a868bcd9a69d4ddd98445c |
| genomic_resource_original.yaml | 4.29 KB | fe205aef7586650beb16c8851d8e4089 |
| statistics/ |