TF_ChIP-seq_ENCSR775NLJ
TF_ChIP-seq ENCSR775NLJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3" and target="CHCHD3"]
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| Id: | TF_ChIP-seq/ENCSR775NLJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR775NLJ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3" and target="CHCHD3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN083SKH|/analyses/ENCAN083SKH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF011DTR|/files/ENCFF011DTR/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF011DTR|/files/ENCFF011DTR/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC2 value of 9.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF652TFO|/files/ENCFF652TFO/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF652TFO|/files/ENCFF652TFO/} processed by ChIP-seq ENCODE4 v2.1.2 GRCh38 pipeline was generated from a library with PBC2 value of 9.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR775NLJ | float |
TF_ChIP-seq_ENCSR775NLJ |
TF_ChIP-seq ENCSR775NLJ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CHCHD3" and target="CHCHD3"]
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[16.5, 1.16e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF645IVF.bed.gz | 43.91 KB | a6784f53b50d72b4a38ac6b5ae29d030 |
| ENCFF645IVF.bed.gz.dvc | 99.0 B | 341b3e8fc1a31f5d2120b6a20b9a7d96 |
| ENCFF645IVF.tabix.bed.gz | 27.59 KB | c899b60fb55b5dd482e0fe0c19df46dc |
| ENCFF645IVF.tabix.bed.gz.dvc | 105.0 B | ecd97a2649914ab207386cf09f127d64 |
| ENCFF645IVF.tabix.bed.gz.tbi | 22.74 KB | ad04aee4571b2f042d1905bf5b1edcb1 |
| ENCFF645IVF.tabix.bed.gz.tbi.dvc | 109.0 B | bfbba901db9bf7acaeb3346b6f08ec93 |
| genomic_resource.yaml | 4.24 KB | f24efc94cfb204349015f171db1f0070 |
| genomic_resource_original.yaml | 4.07 KB | ce14244d4e8473f9abffb4eba135f34b |
| statistics/ |