| Id: | TF_ChIP-seq/ENCSR775FSH |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR775FSH [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B" and target="ZNF280B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN139VCH|/analyses/ENCAN139VCH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF228XES|/files/ENCFF228XES/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF228XES|/files/ENCFF228XES/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.93. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF272BFO|/files/ENCFF272BFO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF272BFO|/files/ENCFF272BFO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.98. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR775FSH | float |
TF_ChIP-seq_ENCSR775FSH |
TF_ChIP-seq ENCSR775FSH [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF280B" and target="ZNF280B"]
|
 |
[15.2, 705] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF253UAF.bed.gz | 34.27 KB | 551ef640c22c0069aa84b5f5c7cb0ec2 |
| ENCFF253UAF.bed.gz.dvc | 99.0 B | 1e4d08a54d49bc240aca7f24ebb7681a |
| ENCFF253UAF.tabix.bed.gz | 22.07 KB | 008ed30484c4fefaec7a823418c7db67 |
| ENCFF253UAF.tabix.bed.gz.dvc | 105.0 B | 35d92c373a0d00f1490e07c843c420b1 |
| ENCFF253UAF.tabix.bed.gz.tbi | 19.6 KB | 9a4c1b35199c02383a83eb8714977183 |
| ENCFF253UAF.tabix.bed.gz.tbi.dvc | 109.0 B | 4dbd1610ea13a150b902fbee7a57e15c |
| genomic_resource.yaml | 4.24 KB | 8719eb094224bf49ff2f4c0df75224c0 |
| genomic_resource_original.yaml | 4.08 KB | 064fcde7fb01c0dc7a678bad6e0e9dfd |
| statistics/ |