TF_ChIP-seq_ENCSR775EOB
TF_ChIP-seq ENCSR775EOB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC2" and target="SNAPC2"]
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| Id: | TF_ChIP-seq/ENCSR775EOB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR775EOB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC2" and target="SNAPC2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN043YII|/analyses/ENCAN043YII/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF457SIH|/files/ENCFF457SIH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF457SIH|/files/ENCFF457SIH/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR775EOB | float |
TF_ChIP-seq_ENCSR775EOB |
TF_ChIP-seq ENCSR775EOB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SNAPC2" and target="SNAPC2"]
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[11.3, 909] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF727SKX.bed.gz | 253.15 KB | 2f09650339e9d5e3b0e60b92817e5df1 |
| ENCFF727SKX.bed.gz.dvc | 100.0 B | a7ad340e4342947bebdfa9b6b24698c1 |
| ENCFF727SKX.tabix.bed.gz | 190.52 KB | 0475e5f03f91a8ec95a819fc1626ed8e |
| ENCFF727SKX.tabix.bed.gz.dvc | 106.0 B | a466a8b0a71e0e704b71a76aff603706 |
| ENCFF727SKX.tabix.bed.gz.tbi | 84.6 KB | f2b3b2029c6b7601af2dfcd9247223e3 |
| ENCFF727SKX.tabix.bed.gz.tbi.dvc | 109.0 B | 70dbc2f44bc15ea3d1d0f43b75759883 |
| genomic_resource.yaml | 2.97 KB | 0be1d5b5d46a2101d3f41622bfcd6b30 |
| genomic_resource_original.yaml | 2.81 KB | 47652368e5a18938e42d635419f0b0f9 |
| statistics/ |