TF_ChIP-seq_ENCSR771SNW
TF_ChIP-seq ENCSR771SNW [biosample_summary="Homo sapiens H1" and target="CBX8"]
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| Id: | TF_ChIP-seq/ENCSR771SNW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR771SNW [biosamplesummary="Homo sapiens H1" and target="CBX8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN081WNX|/analyses/ENCAN081WNX/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF805INP|/files/ENCFF805INP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16325271 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CBX8-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF878IXK|/files/ENCFF878IXK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 15871315 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CBX8-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF485WCF|/files/ENCFF485WCF/}, {ENCFF396VHM|/files/ENCFF396VHM/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.41 and a self consistency ratio of 4.89. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF421WSN|/files/ENCFF421WSN/}, {ENCFF636NMA|/files/ENCFF636NMA/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.41 and a self consistency ratio of 4.89. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR771SNW | float |
TF_ChIP-seq_ENCSR771SNW |
TF_ChIP-seq ENCSR771SNW [biosample_summary="Homo sapiens H1" and target="CBX8"]
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[4.9, 205] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF485WCF.bed.gz | 48.95 KB | 64865d8a339096577e031f83de5b9e37 |
| ENCFF485WCF.bed.gz.dvc | 99.0 B | 07eed83b3d96f895391e84b7a063d99d |
| ENCFF485WCF.tabix.bed.gz | 42.59 KB | eaf676979f8e01f3d722b5a3db176175 |
| ENCFF485WCF.tabix.bed.gz.dvc | 105.0 B | c9559c5750b0da27176f10839c6a9bb1 |
| ENCFF485WCF.tabix.bed.gz.tbi | 11.2 KB | 14e902db357b964f10d200c06275f09c |
| ENCFF485WCF.tabix.bed.gz.tbi.dvc | 109.0 B | d241c21f28bd12b9e231420392e0fb6a |
| genomic_resource.yaml | 3.54 KB | 44488c084d944224ec3e41150979814a |
| genomic_resource_original.yaml | 3.45 KB | c450e6f57f53ebdceaaf997adb81dca7 |
| statistics/ |