| Id: | TF_ChIP-seq/ENCSR767XSF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR767XSF [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF555" and target="ZNF555"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF555 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN562RGP|/analyses/ENCAN562RGP/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF053SKK|/files/ENCFF053SKK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF053SKK|/files/ENCFF053SKK/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.22. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF527ONV|/files/ENCFF527ONV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF527ONV|/files/ENCFF527ONV/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 5.78. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR767XSF | float |
TF_ChIP-seq_ENCSR767XSF |
TF_ChIP-seq ENCSR767XSF [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF555" and target="ZNF555"]
|
 |
[16.8, 1.06e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF308CQD.bed.gz | 119.62 KB | c31fe4efb08f3e2ca3ffdbbc0827db23 |
| ENCFF308CQD.bed.gz.dvc | 100.0 B | 9a2af89d5893fdef4e772339947df971 |
| ENCFF308CQD.tabix.bed.gz | 82.11 KB | 40479fb2a6ffaeb880fafa61933900f6 |
| ENCFF308CQD.tabix.bed.gz.dvc | 105.0 B | fefc66bb609e8f83a28545235b5f3028 |
| ENCFF308CQD.tabix.bed.gz.tbi | 66.52 KB | c2562181fcf02eb3fcf9ada3fb219dad |
| ENCFF308CQD.tabix.bed.gz.tbi.dvc | 109.0 B | afbf64d272a7953bd87f809a64aca60c |
| genomic_resource.yaml | 4.48 KB | d3df1fc91600333b1fa04577a3deb2d5 |
| genomic_resource_original.yaml | 4.3 KB | 18aeb55352a9b4c8393da7600f61e4d7 |
| statistics/ |