TF_ChIP-seq_ENCSR766TSU
TF_ChIP-seq ENCSR766TSU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX6" and target="SOX6"]
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| Id: | TF_ChIP-seq/ENCSR766TSU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR766TSU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX6" and target="SOX6"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SOX6 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN385GAR|/analyses/ENCAN385GAR/} has in progress subobject document {8ecd9902-eec1-4741-a5b7-cff8263a7962|/documents/8ecd9902-eec1-4741-a5b7-cff8263a7962/} audit_internal_action: Released analysis {ENCAN385GAR|/analyses/ENCAN385GAR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF235DTA|/files/ENCFF235DTA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF235DTA|/files/ENCFF235DTA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR766TSU | float |
TF_ChIP-seq_ENCSR766TSU |
TF_ChIP-seq ENCSR766TSU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SOX6" and target="SOX6"]
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[15, 1.02e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF863JMY.bed.gz | 951.74 KB | a278e052aa74f2b745c092db8090b57a |
| ENCFF863JMY.bed.gz.dvc | 100.0 B | 31bf282a8ae24e9c40b522deb3266b6e |
| ENCFF863JMY.tabix.bed.gz | 764.49 KB | 6fd6c560bfc1a50933ae7969c7c757e0 |
| ENCFF863JMY.tabix.bed.gz.dvc | 106.0 B | 542939c7cdbbc3529ff163dca21a0329 |
| ENCFF863JMY.tabix.bed.gz.tbi | 237.88 KB | 4f0944e4415cb56b782a500e1d2ef3c0 |
| ENCFF863JMY.tabix.bed.gz.tbi.dvc | 110.0 B | f40cd218e7d60d1b5e8c1f29b91fc29e |
| genomic_resource.yaml | 3.17 KB | 8449d28068e3b93386dc66ef29f9d68d |
| genomic_resource_original.yaml | 3.01 KB | 764f26e206352c9cf7d05475019a9142 |
| statistics/ |