TF_ChIP-seq_ENCSR765VDK
TF_ChIP-seq ENCSR765VDK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMYD3" and target="SMYD3"]
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| Id: | TF_ChIP-seq/ENCSR765VDK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR765VDK [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMYD3" and target="SMYD3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens SMYD3 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN688BTJ|/analyses/ENCAN688BTJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF113JXU|/files/ENCFF113JXU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF113JXU|/files/ENCFF113JXU/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.37. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF835TKS|/files/ENCFF835TKS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF835TKS|/files/ENCFF835TKS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR765VDK | float |
TF_ChIP-seq_ENCSR765VDK |
TF_ChIP-seq ENCSR765VDK [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens SMYD3" and target="SMYD3"]
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[12.1, 496] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF509GED.bed.gz | 221.06 KB | 4070826ba47ff674d8abd6216fa0d117 |
| ENCFF509GED.bed.gz.dvc | 100.0 B | 5f36d2d13ba5fbfb3710316a95c14c7e |
| ENCFF509GED.tabix.bed.gz | 168.66 KB | fd3ed0c3575dc9ae49d32c95cf7fd51a |
| ENCFF509GED.tabix.bed.gz.dvc | 106.0 B | 7a68bbfd68e1863dfbce75ed2f089f76 |
| ENCFF509GED.tabix.bed.gz.tbi | 75.59 KB | a1aae2b04845573060e4f68e3125df17 |
| ENCFF509GED.tabix.bed.gz.tbi.dvc | 109.0 B | 4e36abbe47c1b0e1432f91c563caf7db |
| genomic_resource.yaml | 4.23 KB | 1ebdd8fb9bbc68222c845f776f5a14d7 |
| genomic_resource_original.yaml | 4.07 KB | b51d3b916233da3c4225ca8ec8a7d8de |
| statistics/ |