TF_ChIP-seq_ENCSR764CZW
TF_ChIP-seq ENCSR764CZW [biosample_summary="Homo sapiens GM12878" and target="ZNF217"]
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| Id: | TF_ChIP-seq/ENCSR764CZW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR764CZW [biosamplesummary="Homo sapiens GM12878" and target="ZNF217"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF200SLC|/files/ENCFF200SLC/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN796LCJ|/analyses/ENCAN796LCJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF577SKC|/files/ENCFF577SKC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF577SKC|/files/ENCFF577SKC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.12. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF252GCC|/files/ENCFF252GCC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF252GCC|/files/ENCFF252GCC/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR764CZW | float |
TF_ChIP-seq_ENCSR764CZW |
TF_ChIP-seq ENCSR764CZW [biosample_summary="Homo sapiens GM12878" and target="ZNF217"]
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[15.4, 950] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF200SLC.bed.gz | 392.72 KB | 497113d1d2e932e9a95395c0aed4fa20 |
| ENCFF200SLC.bed.gz.dvc | 100.0 B | 8e0729fb0d14983dcfd1517ea2b45b28 |
| ENCFF200SLC.tabix.bed.gz | 283.53 KB | 6dfd878430649629396fa05af068a9ae |
| ENCFF200SLC.tabix.bed.gz.dvc | 106.0 B | eb118650b8cbdfd362ef1c9991bc6b9a |
| ENCFF200SLC.tabix.bed.gz.tbi | 126.51 KB | 89dbfee92ce06cfe4031df96cfa85c04 |
| ENCFF200SLC.tabix.bed.gz.tbi.dvc | 110.0 B | e10bc30c724fe0906a1b0c9e0814b513 |
| genomic_resource.yaml | 4.14 KB | b39fbca7a506e016fde2b5d6d8412f08 |
| genomic_resource_original.yaml | 4.04 KB | 9a6f003754fe15fc212933fce2f71680 |
| statistics/ |