TF_ChIP-seq_ENCSR763FNU
TF_ChIP-seq ENCSR763FNU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CGGBP1" and target="CGGBP1"]
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| Id: | TF_ChIP-seq/ENCSR763FNU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR763FNU [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CGGBP1" and target="CGGBP1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens CGGBP1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN584DNG|/analyses/ENCAN584DNG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF392KAB|/files/ENCFF392KAB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF392KAB|/files/ENCFF392KAB/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.09. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF238JIA|/files/ENCFF238JIA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF238JIA|/files/ENCFF238JIA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.58. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR763FNU | float |
TF_ChIP-seq_ENCSR763FNU |
TF_ChIP-seq ENCSR763FNU [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens CGGBP1" and target="CGGBP1"]
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[16.6, 1.47e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF771XZZ.bed.gz | 65.37 KB | 1e5d14ffe4735eb1f5b8d3e86ef00c3b |
| ENCFF771XZZ.bed.gz.dvc | 99.0 B | dce408b9f2825aeef51f95ded8443856 |
| ENCFF771XZZ.tabix.bed.gz | 40.93 KB | 4e3852a0c3e4fe0ae88760b403285c1b |
| ENCFF771XZZ.tabix.bed.gz.dvc | 105.0 B | 66cf61b62e2931e58d03487674ca61c6 |
| ENCFF771XZZ.tabix.bed.gz.tbi | 31.72 KB | d72c5ab9fb743f364e7cd11978465951 |
| ENCFF771XZZ.tabix.bed.gz.tbi.dvc | 109.0 B | 746cf9b76b3332ba06c0024bee7de5d4 |
| genomic_resource.yaml | 4.24 KB | 75ad87be806ffec8a96d767b97d0ee21 |
| genomic_resource_original.yaml | 4.07 KB | a8743ee99ad337b2f8597a4d3d68df32 |
| statistics/ |