TF_ChIP-seq_ENCSR762LIP
TF_ChIP-seq ENCSR762LIP [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens AR" and target="AR"]
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| Id: | TF_ChIP-seq/ENCSR762LIP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR762LIP [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens AR" and target="AR"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens AR output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN483IXH|/analyses/ENCAN483IXH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF289ARA|/files/ENCFF289ARA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF289ARA|/files/ENCFF289ARA/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF208OKH|/files/ENCFF208OKH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF208OKH|/files/ENCFF208OKH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.21. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR762LIP | float |
TF_ChIP-seq_ENCSR762LIP |
TF_ChIP-seq ENCSR762LIP [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens AR" and target="AR"]
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[15.6, 1.36e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF414STO.bed.gz | 59.97 KB | 3505f19c8ec70b5105564a407c563fa4 |
| ENCFF414STO.bed.gz.dvc | 99.0 B | 277c8eee48828ce97fedf626288d7b52 |
| ENCFF414STO.tabix.bed.gz | 39.21 KB | bf9af1705d29e5a020d04b70d26bc18a |
| ENCFF414STO.tabix.bed.gz.dvc | 105.0 B | 13ae0bd832081b2785bd7e623d02fb68 |
| ENCFF414STO.tabix.bed.gz.tbi | 25.17 KB | 855f7ffa9cd15197ebe4b7ad4d396a7f |
| ENCFF414STO.tabix.bed.gz.tbi.dvc | 109.0 B | 0dacdc874fa7f86bc2981f23b31a72c3 |
| genomic_resource.yaml | 4.21 KB | 564c6aac213b9462ccf550ca35e2194a |
| genomic_resource_original.yaml | 4.05 KB | f8a69ed4526563fa52371820d14f2f5e |
| statistics/ |