TF_ChIP-seq_ENCSR760UKJ
TF_ChIP-seq ENCSR760UKJ [biosample_summary="Homo sapiens HEK293T" and target="ARNT"]
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| Id: | TF_ChIP-seq/ENCSR760UKJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR760UKJ [biosamplesummary="Homo sapiens HEK293T" and target="ARNT"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN221OHU|/analyses/ENCAN221OHU/} has in progress subobject document {e8dccfd2-31c6-4b2b-8872-a65f9b880333|/documents/e8dccfd2-31c6-4b2b-8872-a65f9b880333/} audit_internal_action: Released analysis {ENCAN221OHU|/analyses/ENCAN221OHU/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF507ADK|/files/ENCFF507ADK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF507ADK|/files/ENCFF507ADK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.64. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR760UKJ | float |
TF_ChIP-seq_ENCSR760UKJ |
TF_ChIP-seq ENCSR760UKJ [biosample_summary="Homo sapiens HEK293T" and target="ARNT"]
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[14.2, 2.71e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF324ORA.bed.gz | 79.35 KB | 2a3e630f78a4940f96018c8fb74e2dcf |
| ENCFF324ORA.bed.gz.dvc | 99.0 B | c740e53c3b1e5840d2cb0acef332743f |
| ENCFF324ORA.tabix.bed.gz | 51.99 KB | 7c806cb8dc336ce704d26d391abb08e6 |
| ENCFF324ORA.tabix.bed.gz.dvc | 105.0 B | 0fba3e64d611d3e808f1fb280e83d78f |
| ENCFF324ORA.tabix.bed.gz.tbi | 42.49 KB | 13a3ae9b90edc0aebdc9a146a3c26f48 |
| ENCFF324ORA.tabix.bed.gz.tbi.dvc | 109.0 B | c9c5185f8f81db122fd17fc997437a08 |
| genomic_resource.yaml | 2.88 KB | ad937d25b28cebc5eb844773b68b3148 |
| genomic_resource_original.yaml | 2.78 KB | c9369265c136902161a8fc5af529ecee |
| statistics/ |