TF_ChIP-seq_ENCSR760GZL
TF_ChIP-seq ENCSR760GZL [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TP53" and target="TP53"]
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| Id: | TF_ChIP-seq/ENCSR760GZL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR760GZL [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TP53" and target="TP53"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TP53 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN685PSR|/analyses/ENCAN685PSR/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF034NEL|/files/ENCFF034NEL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF034NEL|/files/ENCFF034NEL/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.13. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF639FRP|/files/ENCFF639FRP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF639FRP|/files/ENCFF639FRP/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.03. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR760GZL | float |
TF_ChIP-seq_ENCSR760GZL |
TF_ChIP-seq ENCSR760GZL [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens TP53" and target="TP53"]
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[9.25, 476] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF403HEQ.bed.gz | 150.85 KB | 09b86a09c6bc0ac8c6b0efb2a8eec5ae |
| ENCFF403HEQ.bed.gz.dvc | 100.0 B | 2be224b90c3c50ce5b83dcf9809f48cc |
| ENCFF403HEQ.tabix.bed.gz | 112.76 KB | 54f67c97eddd75fa70f915f20ab84f27 |
| ENCFF403HEQ.tabix.bed.gz.dvc | 106.0 B | 1021da9fc2e28923283cb15ff2b29a4d |
| ENCFF403HEQ.tabix.bed.gz.tbi | 62.1 KB | 2340a9272178a4dada1d1561b846eaf4 |
| ENCFF403HEQ.tabix.bed.gz.tbi.dvc | 109.0 B | 6b7d81f59eb69e7aeddad0da959163e8 |
| genomic_resource.yaml | 4.22 KB | dd025a9d15bce3bc2d1d9c75a3f4da25 |
| genomic_resource_original.yaml | 4.06 KB | 4c16bc146189a27df6f6397ec2e189dd |
| statistics/ |