TF_ChIP-seq_ENCSR756UNW
TF_ChIP-seq ENCSR756UNW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548" and target="ZNF548"]
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| Id: | TF_ChIP-seq/ENCSR756UNW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR756UNW [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548" and target="ZNF548"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN828YLD|/analyses/ENCAN828YLD/} has in progress subobject document {bd01dfeb-8170-4bab-8e31-06817b75b0fa|/documents/bd01dfeb-8170-4bab-8e31-06817b75b0fa/} audit_internal_action: Released analysis {ENCAN828YLD|/analyses/ENCAN828YLD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF643VOK|/files/ENCFF643VOK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF643VOK|/files/ENCFF643VOK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.92. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF074AKA|/files/ENCFF074AKA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF074AKA|/files/ENCFF074AKA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.22. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF802DLC|/files/ENCFF802DLC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.92. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF586TZH|/files/ENCFF586TZH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.16 and a self consistency ratio of 2.92. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR756UNW | float |
TF_ChIP-seq_ENCSR756UNW |
TF_ChIP-seq ENCSR756UNW [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF548" and target="ZNF548"]
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[9.27, 575] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF802DLC.bed.gz | 262.08 KB | a046ac51ff4eb7f9eab10f966f933388 |
| ENCFF802DLC.bed.gz.dvc | 100.0 B | b3f85431693617d8ccd128d851ce5a42 |
| ENCFF802DLC.tabix.bed.gz | 202.35 KB | 2a458b419cf6c31c88040239d1b603be |
| ENCFF802DLC.tabix.bed.gz.dvc | 106.0 B | 8591463be3b89175ae9eac8755fb0d14 |
| ENCFF802DLC.tabix.bed.gz.tbi | 87.77 KB | 071f5b37f41cc479d3c05b7407bc48e9 |
| ENCFF802DLC.tabix.bed.gz.tbi.dvc | 109.0 B | 8bdd2d6f1ce24392552a78ad9cc92b99 |
| genomic_resource.yaml | 5.49 KB | 9fdef763adb54a11544a5ec3dd80f0da |
| genomic_resource_original.yaml | 5.33 KB | 516ff0ae6b5299bdcb7730176043396b |
| statistics/ |