TF_ChIP-seq_ENCSR756SZU
TF_ChIP-seq ENCSR756SZU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF13" and target="KLF13"]
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| Id: | TF_ChIP-seq/ENCSR756SZU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR756SZU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF13" and target="KLF13"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens KLF13 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN759HVY|/analyses/ENCAN759HVY/} has replaced subobject file {127c04dc-1d81-4522-aa05-1a3c77f0adef|/files/127c04dc-1d81-4522-aa05-1a3c77f0adef/} audit_internal_action: Released analysis {ENCAN759HVY|/analyses/ENCAN759HVY/} has in progress subobject document {e490d41a-e5b0-4aa5-8593-ed1f2fb6e51c|/documents/e490d41a-e5b0-4aa5-8593-ed1f2fb6e51c/} audit_internal_action: Released analysis {ENCAN759HVY|/analyses/ENCAN759HVY/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF152OUP|/files/ENCFF152OUP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF152OUP|/files/ENCFF152OUP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF069SQK|/files/ENCFF069SQK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF069SQK|/files/ENCFF069SQK/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.92. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR756SZU | float |
TF_ChIP-seq_ENCSR756SZU |
TF_ChIP-seq ENCSR756SZU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KLF13" and target="KLF13"]
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[10.2, 374] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF494FXL.bed.gz | 92.14 KB | a8a6319ad26c83ca555e9d9e8bd3be1b |
| ENCFF494FXL.bed.gz.dvc | 99.0 B | ec58fda40d85b18198ea77db6a643a49 |
| ENCFF494FXL.tabix.bed.gz | 67.78 KB | 657ee7f0d023efb5b249182489af15d7 |
| ENCFF494FXL.tabix.bed.gz.dvc | 105.0 B | d943a1136211015000d3467a3398da27 |
| ENCFF494FXL.tabix.bed.gz.tbi | 41.01 KB | 2ec659ce88d5517d927ff94699cb0dfd |
| ENCFF494FXL.tabix.bed.gz.tbi.dvc | 109.0 B | e647601ecf4e0bbb529eeb59f1956f72 |
| genomic_resource.yaml | 4.64 KB | b03fa087a57b5d083bf3467cbd92e3ce |
| genomic_resource_original.yaml | 4.48 KB | 0a6802a357514268a046cbb3834bd50d |
| statistics/ |