TF_ChIP-seq_ENCSR756CJS
TF_ChIP-seq ENCSR756CJS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850" and target="ZNF850"]
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| Id: | TF_ChIP-seq/ENCSR756CJS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR756CJS [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850" and target="ZNF850"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN530SWM|/analyses/ENCAN530SWM/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF738GZI|/files/ENCFF738GZI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF738GZI|/files/ENCFF738GZI/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.79. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF148IDM|/files/ENCFF148IDM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF148IDM|/files/ENCFF148IDM/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR756CJS | float |
TF_ChIP-seq_ENCSR756CJS |
TF_ChIP-seq ENCSR756CJS [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF850" and target="ZNF850"]
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[9.64, 379] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF331QMY.bed.gz | 98.79 KB | 5c3a113bb9be776d742f40ab3ed48bbd |
| ENCFF331QMY.bed.gz.dvc | 100.0 B | bfe043d677cc8bd80ed749b8cadaa1f6 |
| ENCFF331QMY.tabix.bed.gz | 76.4 KB | d85b98bde73173996494eeaf1b5ac090 |
| ENCFF331QMY.tabix.bed.gz.dvc | 105.0 B | 1a5f63ac91a48dd6501b4bb99a8ea193 |
| ENCFF331QMY.tabix.bed.gz.tbi | 39.56 KB | e709b2cb72ebab20f36065eacca88697 |
| ENCFF331QMY.tabix.bed.gz.tbi.dvc | 109.0 B | 387676c0c6e11cb4c9a3246feb6b5ead |
| genomic_resource.yaml | 4.25 KB | c21109c71189f96199caf88cc629319a |
| genomic_resource_original.yaml | 4.09 KB | ea9eb0392716875d5bc2ab025b942c29 |
| statistics/ |