| Id: | TF_ChIP-seq/ENCSR754SOI |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR754SOI [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529" and target="ZNF529"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529 output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF806WJB|/files/ENCFF806WJB/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN214SOO|/analyses/ENCAN214SOO/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF691KNW|/files/ENCFF691KNW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 19880018 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF529-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF806WJB|/files/ENCFF806WJB/}, {ENCFF962XIF|/files/ENCFF962XIF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 3.18 and a self consistency ratio of 1.80. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF942SCT|/files/ENCFF942SCT/}, {ENCFF369DAY|/files/ENCFF369DAY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline have a rescue ratio of 3.18 and a self consistency ratio of 1.80. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR754SOI | float |
TF_ChIP-seq_ENCSR754SOI |
TF_ChIP-seq ENCSR754SOI [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF529" and target="ZNF529"]
|
 |
[12.4, 1.05e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF806WJB.bed.gz | 84.6 KB | 19dbf1c68d9229ab08015f040ed62dca |
| ENCFF806WJB.bed.gz.dvc | 99.0 B | 96d074eaa33f460829a80cbee27820ab |
| ENCFF806WJB.tabix.bed.gz | 55.84 KB | f31047874d1a1b8fd77751a8437ee358 |
| ENCFF806WJB.tabix.bed.gz.dvc | 105.0 B | 45d15553b26e9e8b9f3a193ca05dbf89 |
| ENCFF806WJB.tabix.bed.gz.tbi | 46.84 KB | ff11c1befeb53bd070b3d64ca579101b |
| ENCFF806WJB.tabix.bed.gz.tbi.dvc | 109.0 B | b5b1e5b60fc0b0c66fa0fe39f572e8ce |
| genomic_resource.yaml | 3.58 KB | d64e461a56794a0ef783d0ea08bfcd7e |
| genomic_resource_original.yaml | 3.4 KB | 9e64e11a098e1dece3b760ae92d8eabe |
| statistics/ |