TF_ChIP-seq_ENCSR754MUD
TF_ChIP-seq ENCSR754MUD [biosample_summary="Homo sapiens HepG2" and target="SKI"]
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| Id: | TF_ChIP-seq/ENCSR754MUD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR754MUD [biosamplesummary="Homo sapiens HepG2" and target="SKI"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN990XSD|/analyses/ENCAN990XSD/} has in progress subobject document {a940f486-6e65-4869-a081-1be8394c3926|/documents/a940f486-6e65-4869-a081-1be8394c3926/} audit_internal_action: Released analysis {ENCAN990XSD|/analyses/ENCAN990XSD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF192TCD|/files/ENCFF192TCD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF192TCD|/files/ENCFF192TCD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.40. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR754MUD | float |
TF_ChIP-seq_ENCSR754MUD |
TF_ChIP-seq ENCSR754MUD [biosample_summary="Homo sapiens HepG2" and target="SKI"]
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[10.9, 5.01e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF405UGF.bed.gz | 521.88 KB | e411e69b1152cd3a58e6ecd60f54203f |
| ENCFF405UGF.bed.gz.dvc | 100.0 B | 04417bc382eca71ee73a8cb14de2422d |
| ENCFF405UGF.tabix.bed.gz | 400.04 KB | 23f2d288c3563e51d0e69848d32d25f0 |
| ENCFF405UGF.tabix.bed.gz.dvc | 106.0 B | 996e75428a094d43101772b23db2e0b7 |
| ENCFF405UGF.tabix.bed.gz.tbi | 161.4 KB | f575e3ca690650e494b3f6faba868376 |
| ENCFF405UGF.tabix.bed.gz.tbi.dvc | 110.0 B | 94fee4c6f81b7da9435527b0b25c0862 |
| genomic_resource.yaml | 3.42 KB | eb2360f4ace455c306eb4ac9f96ad6f6 |
| genomic_resource_original.yaml | 3.33 KB | e929a97f011e2deaa0d8e0bd69fcd1e7 |
| statistics/ |