TF_ChIP-seq_ENCSR754KCC
TF_ChIP-seq ENCSR754KCC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A" and target="KDM2A"]
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| Id: | TF_ChIP-seq/ENCSR754KCC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR754KCC [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A" and target="KDM2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN575LOA|/analyses/ENCAN575LOA/} has in progress subobject document {17d50b0b-14be-46b1-a862-2dc37bd22d2d|/documents/17d50b0b-14be-46b1-a862-2dc37bd22d2d/} audit_internal_action: Released analysis {ENCAN575LOA|/analyses/ENCAN575LOA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF848LAB|/files/ENCFF848LAB/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19466049 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KDM2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF630UOL|/files/ENCFF630UOL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 19663471 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting KDM2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF902PJA|/files/ENCFF902PJA/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.35. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF491GTR|/files/ENCFF491GTR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.35. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR754KCC | float |
TF_ChIP-seq_ENCSR754KCC |
TF_ChIP-seq ENCSR754KCC [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens KDM2A" and target="KDM2A"]
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[8.01, 520] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF902PJA.bed.gz | 683.81 KB | 3e35d755e7cb2184b13e17352c7cc444 |
| ENCFF902PJA.bed.gz.dvc | 100.0 B | df460103a7850d5d514693fc1e511c60 |
| ENCFF902PJA.tabix.bed.gz | 480.64 KB | 39dd17aff9bd8caa983df38cd00f46c2 |
| ENCFF902PJA.tabix.bed.gz.dvc | 106.0 B | a68c333edbf46ca2226544853bedabdd |
| ENCFF902PJA.tabix.bed.gz.tbi | 173.31 KB | 89c0796b0865db148bb4e93d8c637e4d |
| ENCFF902PJA.tabix.bed.gz.tbi.dvc | 110.0 B | 3994e5cf0c8bd914c5714cef33516f09 |
| genomic_resource.yaml | 3.92 KB | 6fe168e91baebe6463234b7cc8914a72 |
| genomic_resource_original.yaml | 3.76 KB | 0e4ada46af289d5e2481fb5f69712119 |
| statistics/ |