TF_ChIP-seq_ENCSR751CJG
TF_ChIP-seq ENCSR751CJG [biosample_summary="Homo sapiens GM12878" and target="CHD4"]
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| Id: | TF_ChIP-seq/ENCSR751CJG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR751CJG [biosamplesummary="Homo sapiens GM12878" and target="CHD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN566HLN|/analyses/ENCAN566HLN/} has in progress subobject document {44184127-1991-44d7-ad99-2427c97112a7|/documents/44184127-1991-44d7-ad99-2427c97112a7/} audit_internal_action: Released analysis {ENCAN566HLN|/analyses/ENCAN566HLN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF524BQP|/files/ENCFF524BQP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF524BQP|/files/ENCFF524BQP/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.81. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR751CJG | float |
TF_ChIP-seq_ENCSR751CJG |
TF_ChIP-seq ENCSR751CJG [biosample_summary="Homo sapiens GM12878" and target="CHD4"]
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[9.4, 127] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF403JIP.bed.gz | 21.24 KB | 198baf0e4868a5559c8de451c9b27238 |
| ENCFF403JIP.bed.gz.dvc | 99.0 B | 7e2c9f9007cb439c3466dff4c4fee9f6 |
| ENCFF403JIP.tabix.bed.gz | 16.88 KB | 582de3c23d0251b720843bc54a2dbc08 |
| ENCFF403JIP.tabix.bed.gz.dvc | 105.0 B | b46aea4b26dff2d524a470af89be0a93 |
| ENCFF403JIP.tabix.bed.gz.tbi | 14.61 KB | 3fb65dbf6c08a221f51e84db31a01d5e |
| ENCFF403JIP.tabix.bed.gz.tbi.dvc | 109.0 B | 7ea7fb2a5586293357874ac8df66b959 |
| genomic_resource.yaml | 2.88 KB | 9e3c249169fd10e35edf75ef3c9e2735 |
| genomic_resource_original.yaml | 2.78 KB | 0defa953922f584430fd0267cff55142 |
| statistics/ |