TF_ChIP-seq_ENCSR750OWO
TF_ChIP-seq ENCSR750OWO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1" and target="HDAC1"]
×
| Id: | TF_ChIP-seq/ENCSR750OWO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR750OWO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1" and target="HDAC1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN462JDG|/analyses/ENCAN462JDG/} has in progress subobject document {7c71b2fe-05b2-49e4-9b1e-55cb61238694|/documents/7c71b2fe-05b2-49e4-9b1e-55cb61238694/} audit_internal_action: Released analysis {ENCAN462JDG|/analyses/ENCAN462JDG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF292GAO|/files/ENCFF292GAO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF292GAO|/files/ENCFF292GAO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.57. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF825UST|/files/ENCFF825UST/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF825UST|/files/ENCFF825UST/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.09. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR750OWO | float |
TF_ChIP-seq_ENCSR750OWO |
TF_ChIP-seq ENCSR750OWO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens HDAC1" and target="HDAC1"]
|
|
[9.78, 447] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF705AOW.bed.gz | 756.48 KB | 5030e5964fbde496edc0d26b990cc3e0 |
| ENCFF705AOW.bed.gz.dvc | 100.0 B | 65a25d3896e74d6c0340b698d8dc85c8 |
| ENCFF705AOW.tabix.bed.gz | 631.95 KB | c5ec194765e068b237f383d5a33955a6 |
| ENCFF705AOW.tabix.bed.gz.dvc | 106.0 B | 7d625bc6b37dd600e0be78925c4974b3 |
| ENCFF705AOW.tabix.bed.gz.tbi | 180.94 KB | 5266d3da6465b93f347b14fbf0bd48dc |
| ENCFF705AOW.tabix.bed.gz.tbi.dvc | 110.0 B | a10ecd9cbd70c8f8d9f97b7a0ffee9b1 |
| genomic_resource.yaml | 4.44 KB | 94913a7682e218b4bbd055d26d341bab |
| genomic_resource_original.yaml | 4.28 KB | 9b19528d1d2c050416f6e0fb2c2e2f67 |
| statistics/ |