TF_ChIP-seq_ENCSR747VUU
TF_ChIP-seq ENCSR747VUU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"]
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| Id: | TF_ChIP-seq/ENCSR747VUU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR747VUU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens JUN output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN550KAT|/analyses/ENCAN550KAT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN550KAT|/analyses/ENCAN550KAT/} has in progress subobject document {b73e1b3b-ff5d-4c18-a3eb-4ff0d8606a88|/documents/b73e1b3b-ff5d-4c18-a3eb-4ff0d8606a88/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF533PJT|/files/ENCFF533PJT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF533PJT|/files/ENCFF533PJT/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 5.35. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF061FLN|/files/ENCFF061FLN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF061FLN|/files/ENCFF061FLN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.06. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR747VUU | float |
TF_ChIP-seq_ENCSR747VUU |
TF_ChIP-seq ENCSR747VUU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JUN" and target="JUN"]
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[8.54, 405] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF636SGK.bed.gz | 235.93 KB | e8ced9038269ca6549c840fa8e6521f6 |
| ENCFF636SGK.bed.gz.dvc | 100.0 B | 7c734baa260c06dcf313d8a3e10cd13d |
| ENCFF636SGK.tabix.bed.gz | 176.07 KB | 8cdae49fa83e9fc1ea0e333dfd63190a |
| ENCFF636SGK.tabix.bed.gz.dvc | 106.0 B | 9a3ebcd8784bd5ae62e5b00e7f549909 |
| ENCFF636SGK.tabix.bed.gz.tbi | 88.36 KB | 46126c76e2983c0bab4a3a5a7393e8ef |
| ENCFF636SGK.tabix.bed.gz.tbi.dvc | 109.0 B | 542fdb44608d8c6d009d71d835510939 |
| genomic_resource.yaml | 4.43 KB | 7378e146a6ab4f832ad838d2c47598d9 |
| genomic_resource_original.yaml | 4.27 KB | 61d2c09481d4324fedff2924b257f828 |
| statistics/ |