TF_ChIP-seq_ENCSR746XEG
TF_ChIP-seq ENCSR746XEG [biosample_summary="Homo sapiens GM12878" and target="NFXL1"]
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| Id: | TF_ChIP-seq/ENCSR746XEG |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR746XEG [biosamplesummary="Homo sapiens GM12878" and target="NFXL1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN545XUT|/analyses/ENCAN545XUT/} has in progress subobject document {f72cb166-307d-4696-a875-53bfd7355907|/documents/f72cb166-307d-4696-a875-53bfd7355907/} audit_internal_action: Released analysis {ENCAN545XUT|/analyses/ENCAN545XUT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF246FIF|/files/ENCFF246FIF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF246FIF|/files/ENCFF246FIF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.45. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF885HTW|/files/ENCFF885HTW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF885HTW|/files/ENCFF885HTW/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.16. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF057NHJ|/files/ENCFF057NHJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.19 and a self consistency ratio of 2.33. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR746XEG | float |
TF_ChIP-seq_ENCSR746XEG |
TF_ChIP-seq ENCSR746XEG [biosample_summary="Homo sapiens GM12878" and target="NFXL1"]
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[13.6, 2.12e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF057NHJ.bed.gz | 88.31 KB | cb23bb603bd4072055593a97f33d8893 |
| ENCFF057NHJ.bed.gz.dvc | 99.0 B | 63b96ea150f16952b3623774b74b7669 |
| ENCFF057NHJ.tabix.bed.gz | 58.45 KB | 28f535c1ee35b5a7c630731d613d6241 |
| ENCFF057NHJ.tabix.bed.gz.dvc | 105.0 B | 0f8e856893c301e3ab5c3a9cb8b90a77 |
| ENCFF057NHJ.tabix.bed.gz.tbi | 26.02 KB | 40c6f830c68c78425290ecca903a2278 |
| ENCFF057NHJ.tabix.bed.gz.tbi.dvc | 109.0 B | 12531a62664ca5a61f1ae41456120b26 |
| genomic_resource.yaml | 4.73 KB | 3ea95ee6f517d7effb3c658b25ba7b43 |
| genomic_resource_original.yaml | 4.64 KB | a30003cc9b4d360113e868ee585afea3 |
| statistics/ |