TF_ChIP-seq_ENCSR744GHR
TF_ChIP-seq ENCSR744GHR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5" and target="E2F5"]
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| Id: | TF_ChIP-seq/ENCSR744GHR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR744GHR [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5" and target="E2F5"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens E2F5 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN684QDP|/analyses/ENCAN684QDP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF027ECD|/files/ENCFF027ECD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF027ECD|/files/ENCFF027ECD/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.62. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF915WXK|/files/ENCFF915WXK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF915WXK|/files/ENCFF915WXK/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.07. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR744GHR | float |
TF_ChIP-seq_ENCSR744GHR |
TF_ChIP-seq ENCSR744GHR [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens E2F5" and target="E2F5"]
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[10.4, 416] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF173QUY.bed.gz | 97.96 KB | 8a96fec76b8ca5f6a49053f771395398 |
| ENCFF173QUY.bed.gz.dvc | 100.0 B | 8e67499380460e683d38dffabe85fcbc |
| ENCFF173QUY.tabix.bed.gz | 69.14 KB | 7a5c5626a0a65e184b4af1c66e155aff |
| ENCFF173QUY.tabix.bed.gz.dvc | 105.0 B | 78b7fc491bcf135c5a573ea1eab77ead |
| ENCFF173QUY.tabix.bed.gz.tbi | 42.0 KB | a60afc9e5dbaef4f69622844c9e5aedd |
| ENCFF173QUY.tabix.bed.gz.tbi.dvc | 109.0 B | 630382ff27b2aae97fb94f69e61de121 |
| genomic_resource.yaml | 4.22 KB | b5398e617e7558353457c945f9eaf902 |
| genomic_resource_original.yaml | 4.06 KB | 1ee76fabcf46f117ebb89bfe86dc6f8c |
| statistics/ |