| Id: | TF_ChIP-seq/ENCSR742KNZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR742KNZ [biosamplesummary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens TFCP2L1" and target="TFCP2L1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens TFCP2L1 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN134HRJ|/analyses/ENCAN134HRJ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF524BLU|/files/ENCFF524BLU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF524BLU|/files/ENCFF524BLU/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.17. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF037EAZ|/files/ENCFF037EAZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF037EAZ|/files/ENCFF037EAZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.82. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR742KNZ | float |
TF_ChIP-seq_ENCSR742KNZ |
TF_ChIP-seq ENCSR742KNZ [biosample_summary="Homo sapiens A549 genetically modified (insertion) using CRISPR targeting H. sapiens TFCP2L1" and target="TFCP2L1"]
|
 |
[14.5, 1.64e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF679WUD.bed.gz | 125.25 KB | 8873b2b4384123d3937e474cb6501dd4 |
| ENCFF679WUD.bed.gz.dvc | 100.0 B | ccfd76f14caeece32c30870814b636a5 |
| ENCFF679WUD.tabix.bed.gz | 81.55 KB | 676dec08fc53de1f8fe974f0e68a67cc |
| ENCFF679WUD.tabix.bed.gz.dvc | 105.0 B | 0816ec82732370d7a9d5b74cbd212ba6 |
| ENCFF679WUD.tabix.bed.gz.tbi | 42.67 KB | 2a8437572f6eba57f5753762c93bd448 |
| ENCFF679WUD.tabix.bed.gz.tbi.dvc | 109.0 B | e3704cb4f649b47b08da6527b17c1168 |
| genomic_resource.yaml | 4.24 KB | e1b2239fd9bc8a830df18e524bf9a704 |
| genomic_resource_original.yaml | 4.08 KB | cd9931b6d268b854cd36cf01b558806c |
| statistics/ |