TF_ChIP-seq_ENCSR742IDN
TF_ChIP-seq ENCSR742IDN [biosample_summary="Homo sapiens K562" and target="NR2C1"]
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| Id: | TF_ChIP-seq/ENCSR742IDN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR742IDN [biosamplesummary="Homo sapiens K562" and target="NR2C1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN455SFN|/analyses/ENCAN455SFN/} has in progress subobject document {2fab3ef5-5b09-4da5-92d0-85922cbe6867|/documents/2fab3ef5-5b09-4da5-92d0-85922cbe6867/} audit_internal_action: Released analysis {ENCAN455SFN|/analyses/ENCAN455SFN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF512RWH|/files/ENCFF512RWH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF512RWH|/files/ENCFF512RWH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.24. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR742IDN | float |
TF_ChIP-seq_ENCSR742IDN |
TF_ChIP-seq ENCSR742IDN [biosample_summary="Homo sapiens K562" and target="NR2C1"]
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[13.3, 2.47e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF469ZBB.bed.gz | 273.21 KB | 2d805bb9f6e08e6753462c3d8a264bc6 |
| ENCFF469ZBB.bed.gz.dvc | 100.0 B | d37afdc38b8fd05e298137699c1b9ee1 |
| ENCFF469ZBB.tabix.bed.gz | 193.12 KB | 8249246c1e7ea757939988af58aab321 |
| ENCFF469ZBB.tabix.bed.gz.dvc | 106.0 B | cbd863246429296a37bee35a37d6c5b1 |
| ENCFF469ZBB.tabix.bed.gz.tbi | 100.88 KB | 005c8d1e558eaf21690481741696dddd |
| ENCFF469ZBB.tabix.bed.gz.tbi.dvc | 110.0 B | 5c5a4c6cc6b85a816e721a902b62d290 |
| genomic_resource.yaml | 2.87 KB | f68d902223075caaa3b85a96a9d2a2c3 |
| genomic_resource_original.yaml | 2.78 KB | f00045483ed04d66675a834813bfeea2 |
| statistics/ |