TF_ChIP-seq_ENCSR741TTE
TF_ChIP-seq ENCSR741TTE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JRK" and target="JRK"]
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| Id: | TF_ChIP-seq/ENCSR741TTE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR741TTE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JRK" and target="JRK"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens JRK output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN479NAQ|/analyses/ENCAN479NAQ/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF383CVR|/files/ENCFF383CVR/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF383CVR|/files/ENCFF383CVR/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.91. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF540IWV|/files/ENCFF540IWV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF540IWV|/files/ENCFF540IWV/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.01. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR741TTE | float |
TF_ChIP-seq_ENCSR741TTE |
TF_ChIP-seq ENCSR741TTE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens JRK" and target="JRK"]
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[11.4, 826] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF674BRV.bed.gz | 276.35 KB | fb3173e1700d0d1adc5c4091eedcf8d2 |
| ENCFF674BRV.bed.gz.dvc | 100.0 B | 96ab8f6ffa15d40b4a56fab0848fc0c5 |
| ENCFF674BRV.tabix.bed.gz | 218.77 KB | 81d74726a9062054ad212182e6bbd441 |
| ENCFF674BRV.tabix.bed.gz.dvc | 106.0 B | 8276d907b225f84614cd3a5c486025a1 |
| ENCFF674BRV.tabix.bed.gz.tbi | 93.68 KB | a0fd41de796bad18e08960948ee9acad |
| ENCFF674BRV.tabix.bed.gz.tbi.dvc | 109.0 B | 781dc61c5423e36f6c72b682aaf46d9f |
| genomic_resource.yaml | 4.21 KB | d688b8a70b3104a8edd6d7ea388c9a68 |
| genomic_resource_original.yaml | 4.06 KB | 6f8c6dc18de6202213ffd83569201e52 |
| statistics/ |