TF_ChIP-seq_ENCSR740XMB
TF_ChIP-seq ENCSR740XMB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ" and target="RBPJ"]
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| Id: | TF_ChIP-seq/ENCSR740XMB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR740XMB [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ" and target="RBPJ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN113VZP|/analyses/ENCAN113VZP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF365YHX|/files/ENCFF365YHX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF365YHX|/files/ENCFF365YHX/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.36. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF730PKL|/files/ENCFF730PKL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF730PKL|/files/ENCFF730PKL/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR740XMB | float |
TF_ChIP-seq_ENCSR740XMB |
TF_ChIP-seq ENCSR740XMB [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens RBPJ" and target="RBPJ"]
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[23.9, 934] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF691JZW.bed.gz | 42.06 KB | 62e27ff2148f4d6a9319b690133b81e9 |
| ENCFF691JZW.bed.gz.dvc | 99.0 B | 25299290041a05a07d6e9c1acb2cfcae |
| ENCFF691JZW.tabix.bed.gz | 26.98 KB | d25c4edc96f4b05d247f19c463ddc47f |
| ENCFF691JZW.tabix.bed.gz.dvc | 105.0 B | d886ef9242cdf5183dcc9233a5a5801c |
| ENCFF691JZW.tabix.bed.gz.tbi | 22.79 KB | 69394ecfa5d4d06b5ebab3b16c113f09 |
| ENCFF691JZW.tabix.bed.gz.tbi.dvc | 109.0 B | abb915ff19f3d402701046d302b6a17d |
| genomic_resource.yaml | 4.22 KB | 17f6d6e9e7e10afd0ae526daaf08b9a2 |
| genomic_resource_original.yaml | 4.06 KB | 0c5a5b2a2eb564f3f2b25c1f491e2a90 |
| statistics/ |