TF_ChIP-seq_ENCSR735VJE
TF_ChIP-seq ENCSR735VJE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LBX2" and target="LBX2"]
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| Id: | TF_ChIP-seq/ENCSR735VJE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR735VJE [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LBX2" and target="LBX2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens LBX2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN720IBD|/analyses/ENCAN720IBD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN720IBD|/analyses/ENCAN720IBD/} has in progress subobject document {de4b343f-156e-4632-9d27-e6ede3c0e0cf|/documents/de4b343f-156e-4632-9d27-e6ede3c0e0cf/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF174LJK|/files/ENCFF174LJK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF174LJK|/files/ENCFF174LJK/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.89. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF918TGZ|/files/ENCFF918TGZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 3.68. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF188CXN|/files/ENCFF188CXN/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.43 and a self consistency ratio of 3.68. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR735VJE | float |
TF_ChIP-seq_ENCSR735VJE |
TF_ChIP-seq ENCSR735VJE [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens LBX2" and target="LBX2"]
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[8.85, 369] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF918TGZ.bed.gz | 119.49 KB | d47914deb1721b045dbd66730ca80e5b |
| ENCFF918TGZ.bed.gz.dvc | 100.0 B | d4d91517d512482528d13e786be5a554 |
| ENCFF918TGZ.tabix.bed.gz | 94.34 KB | 35cb1884de9700c6bd05b8b9bbfcd323 |
| ENCFF918TGZ.tabix.bed.gz.dvc | 105.0 B | 1920c2691e4ca2466ed900e1394f0663 |
| ENCFF918TGZ.tabix.bed.gz.tbi | 53.18 KB | f19bf8fcfdbc63ae7f416ae964c98902 |
| ENCFF918TGZ.tabix.bed.gz.tbi.dvc | 109.0 B | 173ae2bf35b740ce22b922d991ed43cc |
| genomic_resource.yaml | 4.21 KB | 23c2903606bd3d9efdf59819a11e5dc7 |
| genomic_resource_original.yaml | 4.05 KB | a397925ba5b0240ce2e2d22a9484fe05 |
| statistics/ |