TF_ChIP-seq_ENCSR734CRN
TF_ChIP-seq ENCSR734CRN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H8" and target="ZC3H8"]
×
| Id: | TF_ChIP-seq/ENCSR734CRN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR734CRN [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H8" and target="ZC3H8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN525GKO|/analyses/ENCAN525GKO/} has in progress subobject document {c067f373-4cb6-417d-803b-1632621f0d2b|/documents/c067f373-4cb6-417d-803b-1632621f0d2b/} audit_internal_action: Released analysis {ENCAN525GKO|/analyses/ENCAN525GKO/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF167HCU|/files/ENCFF167HCU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.83. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF167HCU|/files/ENCFF167HCU/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.02. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF613ULH|/files/ENCFF613ULH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF613ULH|/files/ENCFF613ULH/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.31. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR734CRN | float |
TF_ChIP-seq_ENCSR734CRN |
TF_ChIP-seq ENCSR734CRN [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZC3H8" and target="ZC3H8"]
|
|
[10.8, 494] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF049ISU.bed.gz | 178.68 KB | f96797936aaa1171a06cf2d521cdec26 |
| ENCFF049ISU.bed.gz.dvc | 100.0 B | fb6ff31177d0eb089075a0ad57b18cd1 |
| ENCFF049ISU.tabix.bed.gz | 140.11 KB | e72ff09a9a65585118bff700be00f329 |
| ENCFF049ISU.tabix.bed.gz.dvc | 106.0 B | f5970119f45ff70268a8ed9f9d1050d4 |
| ENCFF049ISU.tabix.bed.gz.tbi | 63.5 KB | 8d5ba126c5a21f3475c3ef88e5a77060 |
| ENCFF049ISU.tabix.bed.gz.tbi.dvc | 109.0 B | 3436e5d392318e0094fbd42db756cf47 |
| genomic_resource.yaml | 4.44 KB | 0a2218f44f17feff84962a4045abebb9 |
| genomic_resource_original.yaml | 4.28 KB | e85cbc5440a8c850bcbfbdfa96304f7b |
| statistics/ |