TF_ChIP-seq_ENCSR732PJX
TF_ChIP-seq ENCSR732PJX [biosample_summary="Homo sapiens GM12878" and target="NKRF"]
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| Id: | TF_ChIP-seq/ENCSR732PJX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR732PJX [biosamplesummary="Homo sapiens GM12878" and target="NKRF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: File {ENCFF084NXU|/files/ENCFF084NXU/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_internal_action: Archived analysis {ENCAN983DHV|/analyses/ENCAN983DHV/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF244EFU|/files/ENCFF244EFU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.79. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF244EFU|/files/ENCFF244EFU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 4.72. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF422FDA|/files/ENCFF422FDA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF422FDA|/files/ENCFF422FDA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR732PJX | float |
TF_ChIP-seq_ENCSR732PJX |
TF_ChIP-seq ENCSR732PJX [biosample_summary="Homo sapiens GM12878" and target="NKRF"]
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[11.7, 1.51e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF084NXU.bed.gz | 416.9 KB | 5de17ef9575bf6ace5d9e71895363fb1 |
| ENCFF084NXU.bed.gz.dvc | 100.0 B | fbf8dfb680309a90e03e8ccc3ecfe9fa |
| ENCFF084NXU.tabix.bed.gz | 306.88 KB | 08821980c47437eafb214a241939b5ed |
| ENCFF084NXU.tabix.bed.gz.dvc | 106.0 B | 00f8e5f51abb119e05fff085fb6708bc |
| ENCFF084NXU.tabix.bed.gz.tbi | 114.78 KB | 8b24929688f602c4719f31f9b848f983 |
| ENCFF084NXU.tabix.bed.gz.tbi.dvc | 110.0 B | 922716806f68b9b4e72b34b1ba632b4e |
| genomic_resource.yaml | 4.13 KB | 98f8520795ea43ec6468aa23f1a4109a |
| genomic_resource_original.yaml | 4.04 KB | add7aa6db82d38830213b99664e8cff8 |
| statistics/ |