| Id: | TF_ChIP-seq/ENCSR731LZB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR731LZB [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF788P" and target="ZNF788"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF788P output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN728IIA|/analyses/ENCAN728IIA/} has in progress subobject document {e22f83de-0ba1-4feb-8649-7f91d716e39b|/documents/e22f83de-0ba1-4feb-8649-7f91d716e39b/} audit_internal_action: Released analysis {ENCAN728IIA|/analyses/ENCAN728IIA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF286IFZ|/files/ENCFF286IFZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF286IFZ|/files/ENCFF286IFZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.85. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF052QXZ|/files/ENCFF052QXZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF052QXZ|/files/ENCFF052QXZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.48. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF663KMO|/files/ENCFF663KMO/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.83 and a self consistency ratio of 6.60. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF689IBZ|/files/ENCFF689IBZ/} processed by ChIP-seq ENCODE4 v1.5.0 GRCh38 pipeline have a rescue ratio of 1.83 and a self consistency ratio of 6.60. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR731LZB | float |
TF_ChIP-seq_ENCSR731LZB |
TF_ChIP-seq ENCSR731LZB [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF788P" and target="ZNF788"]
|
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[12.1, 397] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF663KMO.bed.gz | 459.26 KB | c73947af35dc621a56ed61b7ca507164 |
| ENCFF663KMO.bed.gz.dvc | 100.0 B | 80504c9e52f1353e2e8b781c201f43bd |
| ENCFF663KMO.tabix.bed.gz | 364.81 KB | f6481eb96d58540662f0c31f07879677 |
| ENCFF663KMO.tabix.bed.gz.dvc | 106.0 B | feba582b4a2a98e0510aa1772afd5e1f |
| ENCFF663KMO.tabix.bed.gz.tbi | 134.21 KB | 19bfffac2e7730b31691da6a6dc2fda1 |
| ENCFF663KMO.tabix.bed.gz.tbi.dvc | 110.0 B | 1a2633bc142babcbd3b850628abd9047 |
| genomic_resource.yaml | 5.5 KB | 4273cd34aad4f2caf69f4b12e51b9401 |
| genomic_resource_original.yaml | 5.33 KB | 1097b97130bd912bbc72661815839a70 |
| statistics/ |