TF_ChIP-seq_ENCSR730DZO
TF_ChIP-seq ENCSR730DZO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B" and target="ARID5B"]
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| Id: | TF_ChIP-seq/ENCSR730DZO |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR730DZO [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B" and target="ARID5B"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN188GYT|/analyses/ENCAN188GYT/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN188GYT|/analyses/ENCAN188GYT/} has in progress subobject document {3993f237-f6b8-447c-9212-9eefc936388c|/documents/3993f237-f6b8-447c-9212-9eefc936388c/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF411CHX|/files/ENCFF411CHX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF411CHX|/files/ENCFF411CHX/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 6.49. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR730DZO | float |
TF_ChIP-seq_ENCSR730DZO |
TF_ChIP-seq ENCSR730DZO [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ARID5B" and target="ARID5B"]
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[8.66, 645] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF477OUI.bed.gz | 968.32 KB | bd77dae3ab8ddaf2d372f63c606963dc |
| ENCFF477OUI.bed.gz.dvc | 100.0 B | 404b8d407106661bed63a3e1e4513426 |
| ENCFF477OUI.tabix.bed.gz | 717.6 KB | 3b61c8d08a3c390902f613bdf407ffd9 |
| ENCFF477OUI.tabix.bed.gz.dvc | 106.0 B | 0d87fc7ef8ad36a41d5f44d8d6b397cb |
| ENCFF477OUI.tabix.bed.gz.tbi | 265.66 KB | 4ba3b35a773104a24eb96076e6571586 |
| ENCFF477OUI.tabix.bed.gz.tbi.dvc | 110.0 B | 3168516e4c13c398ef8ecbb45e54f34d |
| genomic_resource.yaml | 3.18 KB | 6210d7c22ba0d0c50d5ccf558d0187a7 |
| genomic_resource_original.yaml | 3.02 KB | 51855023f80416f40b218ae87c306ada |
| statistics/ |