TF_ChIP-seq_ENCSR727HME
TF_ChIP-seq ENCSR727HME [biosample_summary="Homo sapiens lower leg skin tissue female adult (51 years)" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR727HME |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR727HME [biosamplesummary="Homo sapiens lower leg skin tissue female adult (51 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN706NRH|/analyses/ENCAN706NRH/} has in progress subobject document {f517641d-c6aa-42be-8526-4f0df2864c5d|/documents/f517641d-c6aa-42be-8526-4f0df2864c5d/} audit_internal_action: Released analysis {ENCAN706NRH|/analyses/ENCAN706NRH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF550LMD|/files/ENCFF550LMD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF550LMD|/files/ENCFF550LMD/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.89. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR727HME | float |
TF_ChIP-seq_ENCSR727HME |
TF_ChIP-seq ENCSR727HME [biosample_summary="Homo sapiens lower leg skin tissue female adult (51 years)" and target="CTCF"]
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[16.5, 97] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF490CTJ.bed.gz | 1.24 KB | f53c6c023bf71a4604b7831fb9494381 |
| ENCFF490CTJ.bed.gz.dvc | 98.0 B | a08eb88fb758d636bf4f13c3432df3ab |
| ENCFF490CTJ.tabix.bed.gz | 807.0 B | 6dc01e7815dead56add14b8c76a70435 |
| ENCFF490CTJ.tabix.bed.gz.dvc | 103.0 B | 91e7f5d6d89f23941888a74b570787a4 |
| ENCFF490CTJ.tabix.bed.gz.tbi | 3.38 KB | e26b14aa721f75a97433d557c0f474dc |
| ENCFF490CTJ.tabix.bed.gz.tbi.dvc | 108.0 B | 48c233f61abb0109d47f0202bce1fdd6 |
| genomic_resource.yaml | 2.96 KB | 50809ff0b1b80b879a41f9dbbb9447b1 |
| genomic_resource_original.yaml | 2.83 KB | a59df6cbf4655da927712d2457d233f7 |
| statistics/ |