TF_ChIP-seq_ENCSR722OTA
TF_ChIP-seq ENCSR722OTA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NR3C1" and target="NR3C1"]
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| Id: | TF_ChIP-seq/ENCSR722OTA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR722OTA [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NR3C1" and target="NR3C1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens NR3C1 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN139LRC|/analyses/ENCAN139LRC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF743OZK|/files/ENCFF743OZK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 18916060 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting NR3C1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF743OZK|/files/ENCFF743OZK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF743OZK|/files/ENCFF743OZK/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.08. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF667OJS|/files/ENCFF667OJS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.81. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF667OJS|/files/ENCFF667OJS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.16. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR722OTA | float |
TF_ChIP-seq_ENCSR722OTA |
TF_ChIP-seq ENCSR722OTA [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens NR3C1" and target="NR3C1"]
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[8.61, 519] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF640UMI.bed.gz | 48.54 KB | 2b86d4ca7aa0102bcb47608f832090cc |
| ENCFF640UMI.bed.gz.dvc | 99.0 B | 2a6055a8d7116a45ed234e59c15cc241 |
| ENCFF640UMI.tabix.bed.gz | 34.8 KB | 0160a809841d8bca13c3768340b74706 |
| ENCFF640UMI.tabix.bed.gz.dvc | 105.0 B | f0f0749b4f08d6384272e40a86287dfb |
| ENCFF640UMI.tabix.bed.gz.tbi | 25.76 KB | ffc42036c0fd802bb51cdca35436832a |
| ENCFF640UMI.tabix.bed.gz.tbi.dvc | 109.0 B | 9274056f15f19efd03091cb3d5be5423 |
| genomic_resource.yaml | 4.73 KB | 4aa0d8367c70d69010435866e70239b2 |
| genomic_resource_original.yaml | 4.56 KB | a5fa5ff37dbdf1295b5387900d22af4a |
| statistics/ |