TF_ChIP-seq_ENCSR718SDR
TF_ChIP-seq ENCSR718SDR [biosample_summary="Homo sapiens heart left ventricle tissue female adult (51 years)" and target="CTCF"]
×
| Id: | TF_ChIP-seq/ENCSR718SDR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR718SDR [biosamplesummary="Homo sapiens heart left ventricle tissue female adult (51 years)" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: pseudoreplicated IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN542EPJ|/analyses/ENCAN542EPJ/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_internal_action: File {ENCFF762LPY|/files/ENCFF762LPY/} with status 'released' is derived from file {ENCFF419RSJ|/files/ENCFF419RSJ/} with status 'archived'. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF050BCA|/files/ENCFF050BCA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF050BCA|/files/ENCFF050BCA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.39. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR718SDR | float |
TF_ChIP-seq_ENCSR718SDR |
TF_ChIP-seq ENCSR718SDR [biosample_summary="Homo sapiens heart left ventricle tissue female adult (51 years)" and target="CTCF"]
|
|
[4.29, 391] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF762LPY.bed.gz | 600.59 KB | 5383e824637be1e815f7a4726ea4dccd |
| ENCFF762LPY.bed.gz.dvc | 100.0 B | 7bc36e4900d5500b0471a9acd6e337ce |
| ENCFF762LPY.tabix.bed.gz | 456.29 KB | e660a30904011ea2ffbc730007dbd6e2 |
| ENCFF762LPY.tabix.bed.gz.dvc | 106.0 B | b1ea13654fa415a1e7e98038415023bf |
| ENCFF762LPY.tabix.bed.gz.tbi | 229.28 KB | 0c778b79ba91306b814658175f0ec914 |
| ENCFF762LPY.tabix.bed.gz.tbi.dvc | 110.0 B | f1866ce0a50904e7e56853db01118bfe |
| genomic_resource.yaml | 2.95 KB | 044d0ddd1bce5cb65669ebadcdc0bb26 |
| genomic_resource_original.yaml | 2.82 KB | fcda2ad833abbe4cee9fcca1d805ab6f |
| statistics/ |