TF_ChIP-seq_ENCSR717QWW
TF_ChIP-seq ENCSR717QWW [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF425" and target="ZNF425"]
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| Id: | TF_ChIP-seq/ENCSR717QWW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR717QWW [biosamplesummary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF425" and target="ZNF425"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF425 output_type: conservative IDR thresholded peaks audit_internal_action: Released analysis {ENCAN281DZA|/analyses/ENCAN281DZA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF945AZH|/files/ENCFF945AZH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF945AZH|/files/ENCFF945AZH/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.59. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF665IBX|/files/ENCFF665IBX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF665IBX|/files/ENCFF665IBX/} processed by ChIP-seq ENCODE4 v1.9.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.51. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR717QWW | float |
TF_ChIP-seq_ENCSR717QWW |
TF_ChIP-seq ENCSR717QWW [biosample_summary="Homo sapiens WTC11 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF425" and target="ZNF425"]
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[13.5, 1.09e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF992ZXB.bed.gz | 40.8 KB | ea673a8009de7be20fae709e60bf5d94 |
| ENCFF992ZXB.bed.gz.dvc | 99.0 B | 07288c0dae4cdcfb9401db297768cd1a |
| ENCFF992ZXB.tabix.bed.gz | 26.48 KB | 7a78544c347cc569c64a5fb307d9318f |
| ENCFF992ZXB.tabix.bed.gz.dvc | 105.0 B | 6a827b98f69777acac8197cd7290b01b |
| ENCFF992ZXB.tabix.bed.gz.tbi | 17.15 KB | 25ac3aa631679fae0979214e581e494e |
| ENCFF992ZXB.tabix.bed.gz.tbi.dvc | 109.0 B | ddcb54bcaff9ec2d13eb9a92efc0740c |
| genomic_resource.yaml | 4.25 KB | 654442baa9f64986d808fc6407e3a7c3 |
| genomic_resource_original.yaml | 4.09 KB | 10536701e4f8ec232a7577f8de847ae0 |
| statistics/ |