TF_ChIP-seq_ENCSR715EIP
TF_ChIP-seq ENCSR715EIP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRF2" and target="BRF2"]
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| Id: | TF_ChIP-seq/ENCSR715EIP |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR715EIP [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRF2" and target="BRF2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens BRF2 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN440RRX|/analyses/ENCAN440RRX/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF499XWR|/files/ENCFF499XWR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.84. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF499XWR|/files/ENCFF499XWR/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.29. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF772ZPS|/files/ENCFF772ZPS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF772ZPS|/files/ENCFF772ZPS/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR715EIP | float |
TF_ChIP-seq_ENCSR715EIP |
TF_ChIP-seq ENCSR715EIP [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens BRF2" and target="BRF2"]
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[8.84, 1.03e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF647CDO.bed.gz | 198.82 KB | 44c8d3a313e4f7d23c262ba95977fb23 |
| ENCFF647CDO.bed.gz.dvc | 100.0 B | 4dc00bd77982e9b508674db4443637aa |
| ENCFF647CDO.tabix.bed.gz | 154.23 KB | 88fde1e948cc00dbebb5d282b0fec0a4 |
| ENCFF647CDO.tabix.bed.gz.dvc | 106.0 B | 07ae5a95d53a853ed7c368c65d2b1076 |
| ENCFF647CDO.tabix.bed.gz.tbi | 71.2 KB | 18f9b304b393d3c683d779b2c662a861 |
| ENCFF647CDO.tabix.bed.gz.tbi.dvc | 109.0 B | 4bb785d1726770eeed2ecc682669714f |
| genomic_resource.yaml | 4.22 KB | 462781bd8abc61fd86ac1805fe8087da |
| genomic_resource_original.yaml | 4.06 KB | 5f1bf7acfdda44dcd8f7cd85d8577572 |
| statistics/ |