TF_ChIP-seq_ENCSR712KVZ
TF_ChIP-seq ENCSR712KVZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324" and target="ZNF324"]
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| Id: | TF_ChIP-seq/ENCSR712KVZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR712KVZ [biosamplesummary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324" and target="ZNF324"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN880XUH|/analyses/ENCAN880XUH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN880XUH|/analyses/ENCAN880XUH/} has in progress subobject document {82fe77a3-3ace-4caa-a55a-55bd7b0fa469|/documents/82fe77a3-3ace-4caa-a55a-55bd7b0fa469/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF077ZYC|/files/ENCFF077ZYC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF077ZYC|/files/ENCFF077ZYC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.83. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR712KVZ | float |
TF_ChIP-seq_ENCSR712KVZ |
TF_ChIP-seq ENCSR712KVZ [biosample_summary="Homo sapiens K562 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF324" and target="ZNF324"]
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[15.8, 1.4e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF265MQC.bed.gz | 104.18 KB | d74524c849a2bb906bcada18278c37f4 |
| ENCFF265MQC.bed.gz.dvc | 100.0 B | 3e37ae6ee58d297362751479e7c7d6a3 |
| ENCFF265MQC.tabix.bed.gz | 70.43 KB | d301df3be6d38550763d54dbaf078d60 |
| ENCFF265MQC.tabix.bed.gz.dvc | 105.0 B | 328e10f7682b46a732b5e572bd779a68 |
| ENCFF265MQC.tabix.bed.gz.tbi | 52.6 KB | 5bbb964fcb80e12cd9ebe1cd7ddf4d39 |
| ENCFF265MQC.tabix.bed.gz.tbi.dvc | 109.0 B | 1f633cfe39241edf2849239685ebbc46 |
| genomic_resource.yaml | 3.18 KB | 32372ae6bdacf1afc23c31671ea4a51a |
| genomic_resource_original.yaml | 3.02 KB | 3e5795e56cbb0d620bc5514e3d20d83b |
| statistics/ |