TF_ChIP-seq_ENCSR711XNY
TF_ChIP-seq ENCSR711XNY [biosample_summary="Homo sapiens GM12878" and target="PKNOX1"]
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| Id: | TF_ChIP-seq/ENCSR711XNY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR711XNY [biosamplesummary="Homo sapiens GM12878" and target="PKNOX1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN587REP|/analyses/ENCAN587REP/} has in progress subobject document {cf9f4965-322d-4e11-92db-aca56c9da112|/documents/cf9f4965-322d-4e11-92db-aca56c9da112/} audit_internal_action: Released analysis {ENCAN587REP|/analyses/ENCAN587REP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF568MVO|/files/ENCFF568MVO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF568MVO|/files/ENCFF568MVO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.08. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR711XNY | float |
TF_ChIP-seq_ENCSR711XNY |
TF_ChIP-seq ENCSR711XNY [biosample_summary="Homo sapiens GM12878" and target="PKNOX1"]
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[11.2, 7.22e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF946JFA.bed.gz | 595.21 KB | 1b664a58c27b7933ca6a66593d60f821 |
| ENCFF946JFA.bed.gz.dvc | 100.0 B | 0d861a5085b8aca1df300ac9832db624 |
| ENCFF946JFA.tabix.bed.gz | 421.35 KB | 5f57d6a1dd7220430444d10c427a5050 |
| ENCFF946JFA.tabix.bed.gz.dvc | 106.0 B | fbe0ddf1f8d42e97b21be2b6c8136cfa |
| ENCFF946JFA.tabix.bed.gz.tbi | 196.72 KB | 9e2b91cae099cf52128be048f8b0e76c |
| ENCFF946JFA.tabix.bed.gz.tbi.dvc | 110.0 B | 0f4ccdb922e312d837e4f2a244ec897e |
| genomic_resource.yaml | 2.88 KB | 1eb14176bfaf694fbbb43fdbd9b7c967 |
| genomic_resource_original.yaml | 2.78 KB | 45e09b33005e796aaeb74551236ef266 |
| statistics/ |