TF_ChIP-seq_ENCSR708KAA
TF_ChIP-seq ENCSR708KAA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAFG" and target="MAFG"]
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| Id: | TF_ChIP-seq/ENCSR708KAA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR708KAA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAFG" and target="MAFG"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens MAFG output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN917NIG|/analyses/ENCAN917NIG/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN917NIG|/analyses/ENCAN917NIG/} has in progress subobject document {a8fca16c-3e67-4f88-bfa2-80ce81afaa3d|/documents/a8fca16c-3e67-4f88-bfa2-80ce81afaa3d/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF767UVY|/files/ENCFF767UVY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF767UVY|/files/ENCFF767UVY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 8.46. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF832KXL|/files/ENCFF832KXL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF832KXL|/files/ENCFF832KXL/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.26. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR708KAA | float |
TF_ChIP-seq_ENCSR708KAA |
TF_ChIP-seq ENCSR708KAA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens MAFG" and target="MAFG"]
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[9.75, 531] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF944IDN.bed.gz | 67.58 KB | d12a196405cdcf13656be15845fa28fa |
| ENCFF944IDN.bed.gz.dvc | 99.0 B | eb588d666a5388c1de43668786771492 |
| ENCFF944IDN.tabix.bed.gz | 46.55 KB | 0b5d8742bfb96d56d8bf7cbbe2453e30 |
| ENCFF944IDN.tabix.bed.gz.dvc | 105.0 B | 41284df046898f8f5c981e292e561657 |
| ENCFF944IDN.tabix.bed.gz.tbi | 35.62 KB | a4ec95aa98d39d5b1cf68f9276bf1622 |
| ENCFF944IDN.tabix.bed.gz.tbi.dvc | 109.0 B | 7d13fb7c0705094ebd6ff792d8b4e571 |
| genomic_resource.yaml | 4.43 KB | 600385057c1aa9d3a5cb2ce48abc122a |
| genomic_resource_original.yaml | 4.27 KB | 28a6944389b9420b8332801a37060d23 |
| statistics/ |